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require 'formula'
class Bwa < Formula
url 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2'
homepage 'http://bio-bwa.sourceforge.net/'
md5 '27facf40c92e9af40def844b245ed7db'
head 'https://github.com/lh3/bwa.git'
def install
inreplace "Makefile" do |s|
s.change_make_var! 'CFLAGS', ENV.cflags
end
system "make"
bin.install "bwa"
man1.install "bwa.1"
end
end
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