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require 'formula'
class Blast < Formula
homepage 'http://blast.ncbi.nlm.nih.gov/'
url 'ftp://ftp.ncbi.nih.gov/blast/executables/blast+/2.2.25/ncbi-blast-2.2.25+-src.tar.gz'
version '2.2.25'
md5 '01256b808e3af49a5087945b6a8c8293'
fails_with :clang do
build 421
end
option 'with-dll', "Create dynamic binaries instead of static"
# fixes to 2.2.25 acknowledged upstream by Aaron U. per email
# inform configure about -Os
def patches
DATA
end
def install
args = ["--prefix=#{prefix}"]
args << "--with-dll" if build.include? 'with-dll'
cd 'c++' do
system "./configure", *args
system "make"
system "make install"
end
end
def caveats; <<-EOS.undent
Using the option '--with-dll' will create dynamic binaries instead of
static. NCBI Blast static binaries are approximately 28-times larger
than dynamic binaries.
Static binaries should be used for speed if the executable requires
fast startup time, such as if another program is frequently restarting
the blast executables.
EOS
end
end
__END__
---
c++/src/build-system/configure | 24 ++++++++++++------------
1 file changed, 12 insertions(+), 12 deletions(-)
diff --git a/c++/src/build-system/configure b/c++/src/build-system/configure
index 2f467a2..a2d14c7 100755
--- a/c++/src/build-system/configure
+++ b/c++/src/build-system/configure
@@ -8538,29 +8538,29 @@ fi
if test "$compiler" != "MSVC" ; then
if test "$with_debug" = "no" ; then
with_optimization=${with_optimization:="yes"}
- CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-g[0-9]*//g'`
- CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-g[0-9]*//g'`
- LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-g[0-9]*//g'`
+ CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
+ CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
+ LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
CPPFLAGS="-DNDEBUG $CPPFLAGS"
else
with_optimization=${with_optimization:="no"}
- if echo " $CFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ; then
+ if echo " $CFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ; then
CFLAGS="$CFLAGS -g" ; fi
- if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ; then
+ if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ; then
CXXFLAGS="$CXXFLAGS -g" ; fi
if test "${with_tcheck=no}" = "no" ; then
CPPFLAGS="-D_DEBUG $CPPFLAGS"
else
CPPFLAGS="-DNDEBUG $CPPFLAGS"
fi
- if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ;
+ if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ;
then LDFLAGS="$LDFLAGS -g" ; fi
STRIP="@:"
fi
- NOPT_CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
- NOPT_CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
- NOPT_LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
+ NOPT_CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
+ NOPT_CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
+ NOPT_LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
if test "${with_tcheck-no}" != "no"; then
# Suppress warnings when building with ICC.
NOPT_CFLAGS="$NOPT_CFLAGS -O0"
@@ -8575,11 +8575,11 @@ if test "$compiler" != "MSVC" ; then
FAST_CXXFLAGS="$CXXFLAGS"
FAST_LDFLAGS="$LDFLAGS"
else
- if echo " $CFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
+ if echo " $CFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
CFLAGS="$CFLAGS -O" ; fi
- if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
+ if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
CXXFLAGS="$CXXFLAGS -O" ; fi
- if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
+ if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
LDFLAGS="$LDFLAGS -O" ; fi
FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
--
1.7.9.2
|
