blob: 61178574f3696e4a0ffc90a923bcac9079b6ab23 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
|
require 'formula'
class Bamtools < Formula
homepage 'https://github.com/pezmaster31/bamtools'
url 'https://github.com/downloads/pezmaster31/bamtools/bamtools-1.0.2.tar.gz'
sha1 '70d4a1f8d7da73dd381b609b618ed19b6184366e'
head 'https://github.com/pezmaster31/bamtools.git'
depends_on 'cmake' => :build
# Install libbamtools in /usr/local/lib.
# Link statically with libbamtools-util and libjsoncpp, since
# they're not installed by default. Sent upstream:
# https://github.com/pezmaster31/bamtools/pull/55
def patches
DATA
end
def install
mkdir 'default' do
system "cmake", "..", *std_cmake_args
system "make install"
end
end
def test
system "#{bin}/bamtools", "--version"
end
end
__END__
diff -ur bamtools-1.0.2.orig/src/api/CMakeLists.txt bamtools-1.0.2/src/api/CMakeLists.txt
--- bamtools-1.0.2.orig/src/api/CMakeLists.txt 2011-09-09 18:59:44.000000000 -0700
+++ bamtools-1.0.2/src/api/CMakeLists.txt 2012-06-15 10:46:18.000000000 -0700
@@ -54,8 +54,8 @@
target_link_libraries( BamTools-static z )
# set library install destinations
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
+install( TARGETS BamTools LIBRARY DESTINATION "lib" RUNTIME DESTINATION "bin")
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib")
# export API headers
include(../ExportHeader.cmake)
diff -ur bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt
--- bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
+++ bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:41:49.000000000 -0700
@@ -10,7 +10,7 @@
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
# create jsoncpp library
-add_library ( jsoncpp SHARED
+add_library ( jsoncpp STATIC
json_reader.cpp
json_value.cpp
json_writer.cpp
diff -ur bamtools-1.0.2.orig/src/utils/CMakeLists.txt bamtools-1.0.2/src/utils/CMakeLists.txt
--- bamtools-1.0.2.orig/src/utils/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
+++ bamtools-1.0.2/src/utils/CMakeLists.txt 2012-06-15 10:41:34.000000000 -0700
@@ -13,7 +13,7 @@
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
# create BamTools utils library
-add_library ( BamTools-utils SHARED
+add_library ( BamTools-utils STATIC
bamtools_fasta.cpp
bamtools_options.cpp
bamtools_pileup_engine.cpp
|
