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-rw-r--r--Library/Formula/samtools.rb20
1 files changed, 20 insertions, 0 deletions
diff --git a/Library/Formula/samtools.rb b/Library/Formula/samtools.rb
new file mode 100644
index 000000000..eb3e2e4bb
--- /dev/null
+++ b/Library/Formula/samtools.rb
@@ -0,0 +1,20 @@
+require 'formula'
+
+class Samtools <Formula
+ url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.12/samtools-0.1.12a.tar.bz2'
+ homepage 'http://samtools.sourceforge.net/'
+ md5 '500ae32fb431de3940e0e955744b9b36'
+
+ def install
+ # -s is needed on OS X here.
+ inreplace ["Makefile", "bcftools/Makefile"], "$(AR)", "$(AR) -s"
+
+ system "make"
+ system "make razip"
+
+ bin.install %w{samtools razip}
+ prefix.install %w{examples misc}
+ lib.install 'libbam.a'
+ (include+'bam').install Dir['*.h']
+ end
+end