diff options
Diffstat (limited to 'Library/Formula')
| -rw-r--r-- | Library/Formula/tophat.rb | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/Library/Formula/tophat.rb b/Library/Formula/tophat.rb index 27ad43168..4b2e558f8 100644 --- a/Library/Formula/tophat.rb +++ b/Library/Formula/tophat.rb @@ -31,29 +31,29 @@ __END__ @@ -4854,15 +4854,15 @@ exit(0); } - + - std::set<Junction, skip_count_lt> vseg_juncs[num_threads]; + std::set<Junction, skip_count_lt> vseg_juncs[1]; std::set<Junction, skip_count_lt> cov_juncs; std::set<Junction, skip_count_lt> butterfly_juncs; - + std::set<Junction> juncs; - + - std::set<Deletion> vdeletions[num_threads]; - std::set<Insertion> vinsertions[num_threads]; - FusionSimpleSet vfusions[num_threads]; + std::set<Deletion> vdeletions[1]; + std::set<Insertion> vinsertions[1]; + FusionSimpleSet vfusions[1]; - + RefSequenceTable rt(sam_header, true); - + --- a/src/tophat_reports.cpp 2012-10-18 10:43:09.000000000 -0700 +++ b/src/tophat_reports.cpp 2012-10-27 22:39:31.000000000 -0700 @@ -2290,11 +2290,11 @@ - num_threads = 1; + num_threads = 1; } - + - JunctionSet vjunctions[num_threads]; - InsertionSet vinsertions[num_threads]; - DeletionSet vdeletions[num_threads]; @@ -64,13 +64,13 @@ __END__ + DeletionSet vdeletions[1]; + FusionSet vfusions[1]; + Coverage vcoverages[1]; - + vector<boost::thread*> threads; for (int i = 0; i < num_threads; ++i) @@ -2420,10 +2420,10 @@ fprintf(stderr, "Warning: %lu small overhang junctions!\n", (long unsigned int)small_overhangs); */ - + - JunctionSet vfinal_junctions[num_threads]; - InsertionSet vfinal_insertions[num_threads]; - DeletionSet vfinal_deletions[num_threads]; @@ -79,6 +79,6 @@ __END__ + InsertionSet vfinal_insertions[1]; + DeletionSet vfinal_deletions[1]; + FusionSet vfinal_fusions[1]; - + for (int i = 0; i < num_threads; ++i) { |