1 files changed, 31 insertions, 0 deletions
diff --git a/Library/Formula/gmap-gsnap.rb b/Library/Formula/gmap-gsnap.rb
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+++ b/Library/Formula/gmap-gsnap.rb
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+require 'formula'
+
+class GmapGsnap < Formula
+  homepage 'http://research-pub.gene.com/gmap'
+  url 'http://research-pub.gene.com/gmap/src/gmap-gsnap-2012-04-10.tar.gz'
+  md5 'acd1731524eb3517f6e82147c646d27d'
+  version "2012-04-10"
+
+  depends_on "samtools"
+
+  def install
+    ENV['CC'] = "#{ENV.cc} -O3 -m#{MacOS.prefer_64_bit? ? 64 : 32}"
+    system "./configure", "--prefix=#{prefix}"
+    system "make"
+    system "make install"
+  end
+
+  def caveats; <<-EOF.undent
+    You will need to either download or build indexed search databases.
+    See the readme file for how to do this:
+      http://research-pub.gene.com/gmap/src/README
+
+    Databases will be installed to:
+      #{share}
+    EOF
+  end
+
+  def test
+    system "#{bin}/gsnap --version"
+  end
+end