tmap 3.2.0

- Upgrade to version 3.2.0
- Use git and a tag for stable so that we pick up the submodule.
- Add options for 32-bit, Alignment, Google Perf Tools, and NoColor
- Add deps on 'automake' and 'libtool' to generate 'configure'
- Add a conditional dep on google-perftools if optioned.
- Add `env :std` and `fails_with :clang` otherwise missing symbols.

Closes #15425.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>

1 files changed, 29 insertions, 7 deletions

diff --git a/Library/Formula/tmap.rb b/Library/Formula/tmap.rb
index 73d176b01..2ade88ec5 100644
--- a/Library/Formula/tmap.rb
+++ b/Library/Formula/tmap.rb
@@ -2,20 +2,42 @@ require 'formula'
 
 class Tmap < Formula
   homepage 'http://github.com/iontorrent/TMAP'
-  url 'http://github.com/iontorrent/TMAP/tarball/tmap.0.3.7'
-  sha1 '8cb8c6d9ebaeb3486a74a402a07a08c778964682'
-  version '0.3.7'
+  url 'https://github.com/iontorrent/TMAP.git', :tag => 'tmap.3.2.0'
+  sha1 'da3eb4ce3428cec1f5ac12467af4802df6188711'
+  version '3.2.0'
 
   head 'https://github.com/iontorrent/TMAP.git'
 
+  env :std
+
+  option '32-bit'
+  option 'indels',  'Enable adjacent insertion and deletions in the alignment'
+  option 'perf',    'Enable google performance tools for profiling and heap checking'
+  option 'nocolor', 'Disable terminal coloring'
+
+  depends_on :automake
+  depends_on :libtool
+  depends_on 'google-perftools' if build.include? 'perf'
+
   fails_with :clang do
-    build 318
+    build 421
+    cause 'Missing symbols being discussed in iontorrent/TMAP#3'
   end
 
   def install
-    system "sh autogen.sh"
-    system "./configure", "--disable-debug", "--disable-dependency-tracking",
-                          "--prefix=#{prefix}"
+    system 'sh', 'autogen.sh'
+    args = %W[
+      --disable-dependency-tracking
+      --prefix=#{prefix}
+     ]
+    args << '--enable-32bit-support' if build.include? '32-bit' or not MacOS.prefer_64_bit?
+    args << '--enable-perftools' if build.include? 'perf'
+    args << '--disable-coloring' if build.include? 'nocolor'
+    args << '--enable-adjacent-indels' if build.include? 'indels'
+
+    system "./configure", *args
+    ENV.j1
+    system 'make'
     system "make install"
   end