Tweak troubleshooting docs and issue template

- Note that Homebrew Cask issues should be filed elsewhere.
- Make `brew`/homebrew-core issue differential in simpler language
- Tell people to fix all `brew doctor` issues
- Refer to the issue checklist and make it even more clear and prominent
  that we may close it out immediately if they don't use it.
- Note that proposed new issues should be widely relevant.
- Don't tell people they need to `brew cask install java`; we handle
  this in most places with a Java requirement and probably want issues
  filed where we don't.
- Remove reference to Homebrew Dupes and replace with reference to
  Homebrew Cask to try and get people filing stuff there instead.

Fixes #2608

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