From c6a8f36b0970a88cf806f5af9e4663665e94fdb8 Mon Sep 17 00:00:00 2001
From: Ben Blackburne
Date: Tue, 26 Jan 2010 07:55:19 +0000
Subject: Paml 4.4c

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
---
 Library/Formula/paml.rb | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 Library/Formula/paml.rb

(limited to 'Library/Formula/paml.rb')

diff --git a/Library/Formula/paml.rb b/Library/Formula/paml.rb
new file mode 100644
index 000000000..592364b16
--- /dev/null
+++ b/Library/Formula/paml.rb
@@ -0,0 +1,23 @@
+require 'formula'
+
+# Phylogenetic Analysis by Maximum Likelihood
+class Paml <Formula
+  url 'http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz'
+  homepage 'http://abacus.gene.ucl.ac.uk/software/paml.html'
+  md5 '0ab0b722bc28c15b22554ec68576b09f'
+  version '4.4c'
+
+  def install
+    Dir.chdir 'src' do
+      inreplace "Makefile" do |s|
+        s.change_make_var! 'CFLAGS', ENV.cflags
+      end
+      system "make"
+      bin.install %w[baseml basemlg codeml pamp evolver yn00 chi2]
+    end
+
+    (share+'paml').install 'dat'
+    (share+'paml').install Dir['*.ctl']
+    doc.install Dir['doc/*']
+  end
+end
-- 
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